STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_1478IMG reference gene:2512953371; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; Belongs to the ABC transporter superfamily. (539 aa)    
Predicted Functional Partners:
OppC
ABC oligopeptide transporter, inner membrane subunit OppC; IMG reference gene:2512953372; PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.998
OppB
ABC oligopeptide transporter, inner membrane subunit OppB; IMG reference gene:2512953373; PFAM: Binding-protein-dependent transport system inner membrane component.
 
 0.994
OppA
ABC oligopeptide transporter, perplasmic substrate-binding protein OppA; IMG reference gene:2512953374; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.
 
 
 0.968
RSP_3258
ABC peptide transporter, inner membrane subunit; IMG reference gene:2512956763; PFAM: Binding-protein-dependent transport system inner membrane component.
  
 0.936
RSP_3250
ABC peptide transporter, inner membrane subunit; IMG reference gene:2512956757; PFAM: Binding-protein-dependent transport system inner membrane component.
  
 0.931
RSP_1453
ABC peptide/nickel/opine transporter, inner membrane subunit; IMG reference gene:2512953344; PFAM: Binding-protein-dependent transport system inner membrane component.
  
 0.925
DppC
ABC dipeptide transporter, inner membrane subunit DppC; IMG reference gene:2512955834; PFAM: Binding-protein-dependent transport system inner membrane component.
  
 0.921
RSP_3233
ABC peptide transporter, inner membrane subunit; IMG reference gene:2512956744; PFAM: Binding-protein-dependent transport system inner membrane component.
  
 0.919
RSP_0702
ABC peptide transporter, inner membrane subunit; IMG reference gene:2512955723; PFAM: Binding-protein-dependent transport system inner membrane component.
  
 0.902
RSP_0703
ABC peptide transporter, inner membrane subunit; IMG reference gene:2512955724; PFAM: Binding-protein-dependent transport system inner membrane component.
  
 0.857
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.