STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_1495DNA translocase FtsK; IMG reference gene:2512953387; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family. (1094 aa)    
Predicted Functional Partners:
RSP_1494
Putative aspartate aminotransferase; IMG reference gene:2512953386; PFAM: Aminotransferase class I and II.
  
  
 0.962
RSP_1497
Putative outer membrane lipoprotein carrier protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
  
 0.912
dnaE
DNA polymerase III, alpha subunit; IMG reference gene:2512957063; PFAM: PHP domain; Bacterial DNA polymerase III alpha subunit; TIGRFAM: DNA-directed DNA polymerase III (polc).
  
   
 0.870
ftsQ
Cell division septal protein FtsQ; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
   
 
 0.830
RSP_3667
Transcriptional regulator, AraC family with Parallel beta-helix repeat; IMG reference gene:2512957202; PFAM: Domain of unknown function DUF11; TIGRFAM: conserved repeat domain; frameshift in old version eliminated; joined gene, RSP_3666, RSP_3667.
   
 
 0.819
RSP_3669
Hypothetical protein; IMG reference gene:2512957203.
   
 
 0.819
spo0J
Chromosome segregation DNA-binding protein; IMG reference gene:2512956270; PFAM: ParB-like nuclease domain; KorB domain; TIGRFAM: ParB-like partition proteins; truncated by 5 aa; Belongs to the ParB family.
  
  
 0.818
RSP_2930
Hypothetical protein; IMG reference gene:2512954892.
   
 
 0.818
rpoC
DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
 
  
 0.787
ruvA
Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.
 
  
 0.734
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.