STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_1512Hypothetical protein; IMG reference gene:2512953407; PFAM: Protein of unknown function DUF55. (137 aa)    
Predicted Functional Partners:
dksA
Transcriptional regulator, TraR/DksA family; IMG reference gene:2512955164; PFAM: Prokaryotic dksA/traR C4-type zinc finger.
   
    0.880
RSP_1511
Hypothetical protein; IMG reference gene:2512953406; PFAM: YCII-related domain.
  
  
 0.876
tsaD
O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
     
 0.867
gpsA
IMG reference gene:2512953405; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.
  
    0.853
RSP_6208
uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
       0.699
RSP_6207
Hypothetical protein; IMG reference gene:2512953402.
       0.614
RSP_1508
Putative HemY-like membrane protein; IMG reference gene:2512953401; PFAM: HemY protein N-terminus.
       0.613
bchJ
Bacteriochlorophyll synthase, 23 kDa subunit (bchJ); IMG reference gene:2512955287; PFAM: V4R domain; TIGRFAM: bacteriochlorophyll 4-vinyl reductase.
   
    0.497
RSP_0013
Polyphosphate kinase 2, PA0141 family; IMG reference gene:2512954995; PFAM: Polyphosphate kinase 2 (PPK2); TIGRFAM: polyphosphate kinase 2, PA0141 family.
   
    0.480
RSP_0766
Polyphosphate kinase 2, PA0141 family; IMG reference gene:2512955796; PFAM: Polyphosphate kinase 2 (PPK2); TIGRFAM: polyphosphate kinase 2, PA0141 family.
   
    0.480
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.