STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_1516Putative S-adenosyl L-homocysteine hydrolase; IMG reference gene:2512953411; PFAM: HD domain. (194 aa)    
Predicted Functional Partners:
ahcY
Adenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
     
 0.804
RSP_1515
LPS:glycosyltransferase; IMG reference gene:2512953410; PFAM: Glycosyl transferase family 8.
       0.779
RSP_2306
Putative HAD superfamily protein; IMG reference gene:2512954240; TIGRFAM: Haloacid Dehalogenase Superfamily Class (subfamily) IIA; HAD-superfamily class IIA hydrolase, TIGR01459.
 
  
 0.770
dcd
IMG reference gene:2512954552; PFAM: 2'-deoxycytidine 5'-triphosphate deaminase (DCD).
  
     0.768
RSP_1104
IMG reference gene:2512956148; PFAM: Protein of unknown function (DUF1674).
  
     0.730
hisS
histidyl-tRNA synthetase; IMG reference gene:2512957061; PFAM: Anticodon binding domain; tRNA synthetase class II core domain (G, H, P, S and T); TIGRFAM: histidyl-tRNA synthetase.
  
    0.716
RSP_6122
IMG reference gene:2512955649; PFAM: Protein of unknown function (DUF2948).
  
     0.684
nifU
NifU-related protein involved in Fe-S cluster formation; IMG reference gene:2512954569.
  
     0.670
RSP_1056
Periplasmic sensor signal transduction histidine kinase; IMG reference gene:2512956097; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
  
   0.642
RSP_1133
IMG reference gene:2512956176; PFAM: Protein of unknown function (DUF2794).
  
     0.592
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.