STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_1601Methylase involved in ubiquinone/menaquinone biosynthesis; IMG reference gene:2512953500; PFAM: Methyltransferase domain. (209 aa)    
Predicted Functional Partners:
RSP_0580
Putative sulfate transporter, SulP family; IMG reference gene:2512955595; PFAM: Sulfate transporter family; STAS domain; TIGRFAM: high affinity sulphate transporter 1.
   
    0.623
hmuS
Putative hemin transport protein; IMG reference gene:2512955233; PFAM: Haemin-degrading HenS.ChuX domain.
   
    0.577
RSP_1946
IMG reference gene:2512953859; PFAM: Cytochrome P450.
    
 
 0.528
cypC
Putative fatty acid beta hydroxylase (cytochrome P450); IMG reference gene:2512954319; PFAM: Cytochrome P450.
    
 
 0.528
RSP_1087
Short-chain dehydrogenase/reductase family member; IMG reference gene:2512956132; PFAM: short chain dehydrogenase.
   
   0.476
RSP_1602
TRAP-T family transporter, DctM (12TMs) subunit; IMG reference gene:2512953501; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, DctM subunit.
       0.460
dadA2
Putative oxidoreductase, possibly D-amino acid oxidase protein; IMG reference gene:2512955913; PFAM: FAD dependent oxidoreductase.
   
    0.457
RSP_3530
Oxidoreductase; IMG reference gene:2512957042; PFAM: FAD dependent oxidoreductase.
  
  
 0.440
RSP_0752
IMG reference gene:2512955778; PFAM: Acetyltransferase (GNAT) family.
  
    0.435
RSP_1604
TRAP-T family transporter, DctQ (4TMs) subunit; IMG reference gene:2512953502; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component.
       0.423
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.