STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_1613TRAP-T family transporter, DctP subunit; IMG reference gene:2512953511; PFAM: NMT1/THI5 like; TIGRFAM: TRAP transporter solute receptor, TAXI family. (317 aa)    
Predicted Functional Partners:
RSP_1614
TRAP-T family transporter with fused DctQ/DctM subunits; IMG reference gene:2512953512; PFAM: DctM-like transporters; TIGRFAM: TRAP transporter, 4TM/12TM fusion protein.
    0.980
RSP_1615
IMG reference gene:2512953513; PFAM: Domain of unknown function (DUF1850).
 
    0.915
RSP_0489
Transcriptional regulator, GntR family; IMG reference gene:2512955500; PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
  
  
 0.650
RSP_1883
ABC polyamine/opine transporter, periplasmic substrate-binding protein; IMG reference gene:2512953792; PFAM: Bacterial extracellular solute-binding protein.
   
  
 0.642
RSP_0577
IMG reference gene:2512955592; TIGRFAM: putative solute:sodium symporter small subunit; extended by 7 aa.
   
  
 0.631
RSP_3169
FAA-hydrolase-family protein; IMG reference gene:2512956679; PFAM: Fumarylacetoacetate (FAA) hydrolase family.
   
  
 0.620
RSP_3372
TRAP-T family transporter, periplasmic binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
   
  
 0.620
RSP_1420
TRAP-T family transporter, periplasmic binding protein; IMG reference gene:2512957355; PFAM: Tripartite tricarboxylate transporter family receptor.
   
  
 0.614
RSP_3168
ABC transporter, periplasmic binding protein; IMG reference gene:2512956678; PFAM: NMT1/THI5 like.
   
  
 0.613
mccB
Methylcrotonyl-CoA carboxylase beta chain; IMG reference gene:2512954453; PFAM: Carboxyl transferase domain; truncated by 24 aa.
   
  
 0.612
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.