STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_1694Putative short-chain dehydrogenase/reductase; IMG reference gene:2512953598; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (271 aa)    
Predicted Functional Partners:
pduO
IMG reference gene:2512953596; PFAM: Cobalamin adenosyltransferase; TIGRFAM: ATP:cob(I)alamin adenosyltransferase; Belongs to the Cob(I)alamin adenosyltransferase family.
  
    0.645
RSP_6016
Hypoxia-induced family protein; IMG reference gene:2512953597; PFAM: Hypoxia induced protein conserved region.
       0.641
parC
DNA topoisomerase IV subunit A; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.
  
  
 0.547
etfA
IMG reference gene:2512953594; PFAM: Electron transfer flavoprotein domain; Electron transfer flavoprotein FAD-binding domain.
  
   0.504
RSP_0684
Putative oxidoreductase; IMG reference gene:2512955705; PFAM: short chain dehydrogenase.
 
 
 0.496
etfB
IMG reference gene:2512953595; PFAM: Electron transfer flavoprotein domain.
       0.471
DppC
ABC dipeptide transporter, inner membrane subunit DppC; IMG reference gene:2512955834; PFAM: Binding-protein-dependent transport system inner membrane component.
   
    0.457
RSP_1489
Thioredoxin; IMG reference gene:2512953381; PFAM: Thioredoxin; TIGRFAM: thioredoxin.
      0.439
stcD2
Putative NADH-dependent oxidase; IMG reference gene:2512957216; PFAM: HI0933-like protein; NADH:flavin oxidoreductase / NADH oxidase family; frameshift in old version eliminated, translation corrected; truncated by 10 aa.
  
 
 0.435
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
  
 0.424
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.