STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_1774IMG reference gene:2512953680; PFAM: Glucose / Sorbosone dehydrogenase. (392 aa)    
Predicted Functional Partners:
RSP_1652
Restriction endonuclease; IMG reference gene:2512953553; PFAM: HNH endonuclease; truncated by 23 aa.
   
    0.623
accA
acetyl-CoA carboxylase carboxyltransferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA.
       0.485
RSP_1773
Multidrug efflux pump, SMR family, DMT superfamily; IMG reference gene:2512953679; PFAM: Small Multidrug Resistance protein.
       0.485
RSP_3468
3-oxoacyl-(acyl carrier protein) synthase; IMG reference gene:2512956979.
   
    0.437
RSP_2988
Pirin-related protein; IMG reference gene:2512954956; PFAM: Pirin C-terminal cupin domain; Pirin; Belongs to the pirin family.
 
    0.427
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.