Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RSP_1908Outer membrane protein, OmpA/MotB family; IMG reference gene:2512953816; PFAM: OmpA family. (213 aa)    
Predicted Functional Partners:
RSP_1909
Outer membrane general secretion pathway protein, Secretin; IMG reference gene:2512953817; PFAM: Putative phospholipid-binding domain; Bacterial type II and III secretion system protein; Belongs to the bacterial secretin family.
 
    0.942
RSP_1910
IMG reference gene:2512953818; TIGRFAM: Flp pilus assembly protein CpaB.
 
    0.803
RSP_1901
Flp pilus assembly protein TadD; IMG reference gene:2512953810.
 
     0.786
RSP_1900
Flp pilus assembly protein, protease CpaA; IMG reference gene:2512953809; PFAM: Type IV leader peptidase family.
 
     0.771
tolB
Translocation protein TolB precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
 
 0.755
RSP_1907
Putative Flp pilus assembly protein ATPase CpaE; IMG reference gene:2512953815; PFAM: CobQ/CobB/MinD/ParA nucleotide binding domain.
 
    0.723
RSP_1904
Putative Flp pilus assembly protein TadB; IMG reference gene:2512953813; PFAM: Bacterial type II secretion system protein F domain.
 
    0.715
TolQ
Cell division and transport-associated protein TolQ; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
 
   
 0.685
RSP_1902
IMG reference gene:2512953811; PFAM: Tetratricopeptide repeat.
 
    0.684
RSP_1903
Putative Flp pilus assembly protein TadC; IMG reference gene:2512953812; PFAM: Bacterial type II secretion system protein F domain.
 
    0.666
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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