STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_1911Putative soluble lytic murein transglycosylase; IMG reference gene:2512953821; PFAM: Transglycosylase SLT domain. (296 aa)    
Predicted Functional Partners:
RSP_6025
Hypothetical protein; IMG reference gene:2512953820; truncated by 29 aa.
 
    0.717
RSP_1902
IMG reference gene:2512953811; PFAM: Tetratricopeptide repeat.
 
    0.629
RSP_1901
Flp pilus assembly protein TadD; IMG reference gene:2512953810.
 
    0.627
RSP_0627
Putative amidohydrolase; IMG reference gene:2512955643; PFAM: Carbon-nitrogen hydrolase.
   
    0.614
RSP_1900
Flp pilus assembly protein, protease CpaA; IMG reference gene:2512953809; PFAM: Type IV leader peptidase family.
 
    0.575
RSP_1905
Putative Flp pilus assembly protein ATPase CpaF; IMG reference gene:2512953814; PFAM: Type II/IV secretion system protein.
 
    0.559
fliD
Putative flagellar hook-associated protein 2 (filament cap protein); Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
  
 0.511
RSP_1910
IMG reference gene:2512953818; TIGRFAM: Flp pilus assembly protein CpaB.
 
    0.490
RSP_1332
H+-transporting two-sector ATPase, alpha/beta subunit; IMG reference gene:2512956378; PFAM: ATP synthase alpha/beta family, nucleotide-binding domain; TIGRFAM: ATPase FliI/YscN family.
 
  
 0.489
RSP_0549
Sporulation and cell division-related protein; IMG reference gene:2512955562; PFAM: Sporulation related domain.
  
     0.478
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.