Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RSP_1920Pyridoxal kinase; IMG reference gene:2512953832; PFAM: Phosphomethylpyrimidine kinase; TIGRFAM: pyridoxal kinase; extended by 17 aa; Belongs to the pyridoxine kinase family. (289 aa)    
Predicted Functional Partners:
pdxH
Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
    
 0.932
pdxJ
Pyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
     
 0.907
RSP_1921
MOSC domain protein; IMG reference gene:2512953833; PFAM: MOSC domain; 3-alpha domain.
 
    0.863
RSP_0844
Pyridoxal phosphate enzyme, YggS family; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
 
  
 0.827
RSP_7507
Hypothetical protein; IMG reference gene:2512953834; new gene.
       0.773
RSP_1922
Transcriptional regulator, GntR family; IMG reference gene:2512953835; PFAM: Aminotransferase class I and II; Bacterial regulatory proteins, gntR family.
 
  
 0.729
RSP_0018
Putative transcriptional regulator, gntR family; IMG reference gene:2512955000; PFAM: Bacterial regulatory proteins, gntR family; Aminotransferase class I and II.
  
  
 0.615
RSP_3026
Transcriptional regulator, GntR family; IMG reference gene:2512956525; PFAM: Aminotransferase class I and II; Bacterial regulatory proteins, gntR family.
  
  
 0.615
RSP_2417
Transglutaminase-like enzyme, predicted cysteine protease; IMG reference gene:2512954361; PFAM: Transglutaminase-like superfamily; Bacterial transglutaminase-like N-terminal region.
   
    0.437
pheT
phenylalanyl-tRNA synthetase beta subunit; IMG reference gene:2512953665; PFAM: tRNA synthetase B5 domain; B3/4 domain; Ferredoxin-fold anticodon binding domain; Putative tRNA binding domain; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit, non-spirochete bacterial.
   
  
 0.434
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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