STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_1920Pyridoxal kinase; IMG reference gene:2512953832; PFAM: Phosphomethylpyrimidine kinase; TIGRFAM: pyridoxal kinase; extended by 17 aa; Belongs to the pyridoxine kinase family. (289 aa)    
Predicted Functional Partners:
pdxH
Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
  
 
 0.930
pdxJ
Pyridoxine 5'-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.
     
 0.904
RSP_1921
MOSC domain protein; IMG reference gene:2512953833; PFAM: MOSC domain; 3-alpha domain.
 
    0.864
RSP_0844
Pyridoxal phosphate enzyme, YggS family; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.
 
  
 0.781
RSP_7507
Hypothetical protein; IMG reference gene:2512953834; new gene.
       0.773
RSP_1922
Transcriptional regulator, GntR family; IMG reference gene:2512953835; PFAM: Aminotransferase class I and II; Bacterial regulatory proteins, gntR family.
 
  
 0.701
RSP_3026
Transcriptional regulator, GntR family; IMG reference gene:2512956525; PFAM: Aminotransferase class I and II; Bacterial regulatory proteins, gntR family.
  
  
 0.590
RSP_0018
Putative transcriptional regulator, gntR family; IMG reference gene:2512955000; PFAM: Bacterial regulatory proteins, gntR family; Aminotransferase class I and II.
  
  
 0.581
thiD
Hydroxymethylpyrimidine kinase;phosphomethylpyrimidine kinase; IMG reference gene:2512955666; PFAM: Phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase.
  
  
 0.498
RSP_0393
Putative riboflavin biosynthesis protein; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.492
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.