STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_1925Transcriptional regulator, GntR family; IMG reference gene:2512953838; PFAM: Bacterial regulatory proteins, gntR family; FCD domain. (222 aa)    
Predicted Functional Partners:
RSP_3448
Transcriptional regulator, GntR family; IMG reference gene:2512956959; PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
  
     0.769
RSP_3445
Transcriptional regulator, GntR family; IMG reference gene:2512956956; PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
  
     0.768
RSP_1924
BioY family protein; IMG reference gene:2512953837; PFAM: BioY family; extended by 40 aa.
 
   
 0.762
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
 
     0.756
RSP_3676
Transcriptional regulator, GntR family; IMG reference gene:2512957210; PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
  
    0.734
RSP_1607
Transcriptional regulator, GntR family; IMG reference gene:2512953505; PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
  
   
 0.709
RSP_0981
Transcriptional regulator, GntR family; IMG reference gene:2512956018; PFAM: Bacterial regulatory proteins, gntR family; FCD domain; truncated by 12 aa.
  
     0.677
RSP_3664
Transcriptional regulator, GntR family; IMG reference gene:2512957199; PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
  
  
 0.673
RSP_3339
Transcriptional regulator, GntR family; IMG reference gene:2512956848; PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
  
     0.663
RSP_1606
Transcriptional regulator, GntR family; IMG reference gene:2512953504; PFAM: Bacterial regulatory proteins, gntR family; FCD domain.
  
  
 0.633
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.