Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
RSP_1973Cysteine desulfuration protein SufE; IMG reference gene:2512953887; PFAM: Fe-S metabolism associated domain. (142 aa)    
Predicted Functional Partners:
RSP_0431
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 0.994
sufB
Iron-regulated ABC transporter membrane component SufB; IMG reference gene:2512955451; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB.
 
 
 0.905
SufC
Suf C, ATPase; IMG reference gene:2512955449; PFAM: ABC transporter; TIGRFAM: FeS assembly ATPase SufC.
 
 
 0.899
SufD
SufD protein; IMG reference gene:2512955448; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD; old pseudo; mistakenly identified as pseudo based on his to fusion proteins.
 
 
 0.882
RSP_2142
NifS-related protein; IMG reference gene:2512954066; PFAM: Aminotransferase class-V.
 
 
 0.871
RSP_1972
Hypothetical protein; IMG reference gene:2512953886.
  
    0.684
RSP_1949
FeS assembly SUF system protein; IMG reference gene:2512953862; PFAM: Domain of unknown function DUF59; TIGRFAM: FeS assembly SUF system protein.
 
   
 0.538
RSP_1948
Iron-sulfur cluster assembly accessory protein; IMG reference gene:2512953861; PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family.
  
  
 0.472
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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