STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sqdAIMG reference gene:2512953899; PFAM: Acyltransferase. (294 aa)    
Predicted Functional Partners:
sqdD
Glycosyl transferase (sulfolipid biosynthesis) protein; IMG reference gene:2512954511; PFAM: Glycosyl transferase family 8; extended by 18 aa.
  
  
 0.958
sqdC
Putative sulfolipid biosynthesis protein; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
  
  
 0.957
sqdB
UDP-sulfoquinovose synthase; IMG reference gene:2512954512; PFAM: NAD dependent epimerase/dehydratase family.
  
  
 0.942
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.765
RSP_2914
Nucleoside hydrolase; IMG reference gene:2512954876; PFAM: Inosine-uridine preferring nucleoside hydrolase.
   
  
 0.695
RSP_1522
ATPase, YjeE family; IMG reference gene:2512953417; PFAM: Uncharacterised P-loop hydrolase UPF0079; TIGRFAM: ATPase, YjeE family; extended by 8 aa.
 
    0.629
RSP_1982
IMG reference gene:2512953898; PFAM: Domain of unknown function (DUF3458); Peptidase family M1; TIGRFAM: aminopeptidase N, Escherichia coli type.
  
    0.621
RSP_1578
Uncharacterized protein, YfiH family; IMG reference gene:2512953474; PFAM: Multi-copper polyphenol oxidoreductase laccase; TIGRFAM: uncharacterized protein, YfiH family; Belongs to the multicopper oxidase YfiH/RL5 family.
   
    0.614
RSP_3827
Lyso-ornithine lipid acyltransferase; IMG reference gene:2512956487; PFAM: Acyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferases; extended by 28 aa.
  
  
 0.598
RSP_0842
Putative porin; IMG reference gene:2512955871.
  
     0.474
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.