STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_1987Putative soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein; IMG reference gene:2512953903; PFAM: Transglycosylase SLT domain. (198 aa)    
Predicted Functional Partners:
RSP_6232
Hypothetical protein; IMG reference gene:2512956477.
  
     0.669
gatB
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
       0.620
RSP_2651
IMG reference gene:2512954596; PFAM: Protein of unknown function (DUF2927).
  
     0.580
RSP_0842
Putative porin; IMG reference gene:2512955871.
  
    0.560
RSP_6025
Hypothetical protein; IMG reference gene:2512953820; truncated by 29 aa.
  
    0.532
RSP_7557
Hypothetical protein; IMG reference gene:2512955374; new gene; replaced RSP_0365 on the opposite strand.
  
     0.521
fliD
Putative flagellar hook-associated protein 2 (filament cap protein); Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
  
 0.503
RSP_6127
Hypothetical protein; IMG reference gene:2512955764.
  
     0.501
RSP_6129
Hypothetical protein; IMG reference gene:2512955777.
  
     0.500
RSP_6204
Outer membrane protein; IMG reference gene:2512954657; PFAM: Outer membrane protein (OmpH-like).
  
     0.478
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.