Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RSP_1990IMG reference gene:2512953906; PFAM: AsnC family. (143 aa)    
Predicted Functional Partners:
RSP_2719
Transcriptional regulator, AsnC/Lrp family; IMG reference gene:2512954664; PFAM: AsnC family.
  
     0.755
RSP_1867
IMG reference gene:2512953776; PFAM: AsnC family.
  
     0.743
RSP_1991
Putative Ornithine decarboxylase; IMG reference gene:2512953907; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
     0.732
RSP_1945
IMG reference gene:2512953858; PFAM: HTH domain; AsnC family.
  
    0.718
RSP_0722
IMG reference gene:2512955744; PFAM: AsnC family.
  
     0.711
putR
IMG reference gene:2512953473; PFAM: AsnC family.
  
     0.708
RSP_1866
IMG reference gene:2512953775; PFAM: AsnC family.
  
     0.657
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
       0.556
acuR
Transcriptional regulator, TetR family; A transcriptional repressor for its operon. Probably binds to 2 operator sequences in the promoter.
   
    0.458
RSP_2075
Putative Transcriptional regulator; IMG reference gene:2512953995; PFAM: Helix-turn-helix.
   
    0.458
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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