STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_1991Putative Ornithine decarboxylase; IMG reference gene:2512953907; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (381 aa)    
Predicted Functional Partners:
RSP_0854
IMG reference gene:2512955884; PFAM: Ornithine cyclodeaminase/mu-crystallin family.
  
 
 0.930
RSP_2909
Agmatinase; IMG reference gene:2512954872; PFAM: Arginase family; TIGRFAM: agmatinase; Belongs to the arginase family.
  
 
 0.929
speB1
Agmatinase; IMG reference gene:2512957275; PFAM: Arginase family; TIGRFAM: agmatinase; Belongs to the arginase family.
  
 
 0.929
argI
Arginase; IMG reference gene:2512954575; PFAM: Arginase family; TIGRFAM: arginase; Belongs to the arginase family.
  
 
 0.917
RSP_1990
IMG reference gene:2512953906; PFAM: AsnC family.
 
   
 0.742
RSP_3025
Putative NAD(P)H oxidoreductase; IMG reference gene:2512956522; PFAM: Flavodoxin-like fold.
    
  0.663
RSP_1992
Hypothetical protein; IMG reference gene:2512953908; PFAM: Uncharacterized conserved protein (DUF2235); truncated by 26 aa.
 
     0.625
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
    
 0.582
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
  
 0.551
valS
valyl-tRNA synthetase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
  
  
 0.508
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.