Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RSP_1992Hypothetical protein; IMG reference gene:2512953908; PFAM: Uncharacterized conserved protein (DUF2235); truncated by 26 aa. (367 aa)    
Predicted Functional Partners:
RSP_0786
IMG reference gene:2512955813; PFAM: Endonuclease/Exonuclease/phosphatase family.
  
     0.621
RSP_1991
Putative Ornithine decarboxylase; IMG reference gene:2512953907; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
     0.617
RSP_1857
Hypothetical protein; IMG reference gene:2512953766.
  
     0.545
RSP_0870
Hypothetical protein; IMG reference gene:2512955903.
  
     0.510
RSP_0707
IMG reference gene:2512955728; PFAM: Polyketide cyclase / dehydrase and lipid transport.
  
     0.464
RSP_3367
IMG reference gene:2512956876; PFAM: Sulfotransferase family.
  
     0.462
RSP_1760
IMG reference gene:2512953664; PFAM: Protein of unknown function (DUF1523).
  
     0.450
RSP_1186
IMG reference gene:2512956231; PFAM: Protein of unknown function (DUF2886); extended by 7 aa.
  
     0.419
RSP_2930
Hypothetical protein; IMG reference gene:2512954892.
  
    0.418
RSP_1006
Hypothetical protein; IMG reference gene:2512956044.
  
     0.416
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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