Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
amsAUncharacterized protein involved in outer membrane biogenesis; IMG reference gene:2512953922; PFAM: AsmA family. (660 aa)    
Predicted Functional Partners:
RSP_1487
Hypothetical protein; IMG reference gene:2512953379; PFAM: Protein of unknown function (DUF1428).
   
    0.709
RSP_1496
Hypothetical protein; IMG reference gene:2512953389.
   
  
 0.709
RSP_2718
Putative outer membrane protein; IMG reference gene:2512954663.
      
 0.700
RSP_3067
Hypothetical protein; IMG reference gene:2512956568.
   
  
 0.685
RSP_0890
Putative yrbC precursor; IMG reference gene:2512955922; PFAM: Toluene tolerance, Ttg2.
      
 0.683
RSP_1844
Hypothetical protein; IMG reference gene:2512953753.
   
  
 0.680
RSP_0915
Hypothetical protein; IMG reference gene:2512955947; PFAM: Uncharacterized protein conserved in bacteria (DUF2125).
      
 0.678
RSP_1834
Hypothetical protein; IMG reference gene:2512953743.
      
 0.674
ybaU
Putative peptidyl-prolyl cis-trans isomerase; IMG reference gene:2512953921.
 
     0.619
RSP_1860
Cell wall hydrolyses involved in spore germination; IMG reference gene:2512953769; PFAM: Cell Wall Hydrolase.
   
  
 0.567
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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