Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RSP_2010Hypothetical protein; IMG reference gene:2512953926. (68 aa)    
Predicted Functional Partners:
RSP_0654
Putative transporter, DMT superfamily; IMG reference gene:2512955673; PFAM: EamA-like transporter family.
   
    0.577
RSP_2011
IMG reference gene:2512953927; PFAM: Transcription elongation factor, GreA/GreB, C-term.
       0.458
RSP_2012
NUDIX hydrolase, MutT; IMG reference gene:2512953928; PFAM: NUDIX domain; truncated by 12 aa.
  
    0.423
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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