STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_2012NUDIX hydrolase, MutT; IMG reference gene:2512953928; PFAM: NUDIX domain; truncated by 12 aa. (146 aa)    
Predicted Functional Partners:
RSP_2011
IMG reference gene:2512953927; PFAM: Transcription elongation factor, GreA/GreB, C-term.
  
  
 0.706
RSP_2692
Acyltransferase domain (LPS); IMG reference gene:2512954636; PFAM: Acyltransferase family.
   
    0.623
RSP_0453
Hypothetical protein; IMG reference gene:2512955463.
  
    0.480
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
  
 0.441
RSP_0621
Putative DNA helicase; IMG reference gene:2512955637; PFAM: Helicase conserved C-terminal domain; UvrD/REP helicase; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase, RecQ family.
  
  
 0.433
RSP_6232
Hypothetical protein; IMG reference gene:2512956477.
  
     0.433
RSP_2010
Hypothetical protein; IMG reference gene:2512953926.
  
    0.426
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.