STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_2014IMG reference gene:2512953930; PFAM: Protein of unknown function (DUF3108). (237 aa)    
Predicted Functional Partners:
RSP_2013
DEAD/DEAH box helicase; IMG reference gene:2512953929; PFAM: Helicase conserved C-terminal domain; Helicase associated domain (HA2); ATP-dependent helicase C-terminal; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent helicase HrpB.
       0.737
argK
IMG reference gene:2512953931; PFAM: ArgK protein; TIGRFAM: LAO/AO transport system ATPase.
       0.627
RSP_1098
IMG reference gene:2512956143; PFAM: Protein of unknown function (DUF3035).
  
     0.615
RSP_1695
SH3 domain-containing protein; IMG reference gene:2512953599; PFAM: Bacterial SH3 domain.
  
     0.534
RSP_2686
Putative sarcosine oxidase beta subunit; IMG reference gene:2512954631; PFAM: FAD dependent oxidoreductase; TIGRFAM: sarcosine oxidase, beta subunit family, heterotetrameric form.
   
    0.457
RSP_2141
ABC polyamine transporter, periplasmic substrate-binding protein; IMG reference gene:2512954065; PFAM: Bacterial extracellular solute-binding protein.
  
     0.451
exoK
Endo-beta-1,3-1,4-glycanase protein; IMG reference gene:2512954494; PFAM: Glycosyl hydrolases family 16.
   
    0.437
RSP_2469
Hypothetical protein; IMG reference gene:2512954411.
  
     0.430
RSP_1972
Hypothetical protein; IMG reference gene:2512953886.
  
     0.425
fixR
Short-chain alcohol dehydrogenase; IMG reference gene:2512956108; PFAM: short chain dehydrogenase; truncated by 15 aa.
  
     0.410
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.