Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
RSP_2017Hypothetical protein; IMG reference gene:2512953934; PFAM: Protein of unknown function (DUF461). (160 aa)    
Predicted Functional Partners:
rpmB
LSU ribosomal protein L28P; IMG reference gene:2512953932; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
 
   
 0.931
RSP_6029
Hypothetical protein; IMG reference gene:2512953933; extended by 12 aa.
 
    0.862
fbcF
Ubiquinol-cytochrome C reductase, iron-sulfur protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.848
RSP_2018
Hypothetical protein; IMG reference gene:2512953935.
   
  
 0.842
fbcB
Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 
 0.834
coxIII
IMG reference gene:2512953738; PFAM: Cytochrome c oxidase subunit III.
  
   0.814
prrC
PrrC; IMG reference gene:2512953414; PFAM: SCO1/SenC.
 
   
 0.787
coxII
Cytochrome c oxidase polypeptide II precursor (Cytochrome AA3 subunit 2); Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
 
 0.783
qoxB
QoxB, Quinol oxidase subunit II; IMG reference gene:2512956600; PFAM: Cytochrome C oxidase subunit II, periplasmic domain; non-canonical start codon; truncated by 90 aa.
  
 
 0.764
dorA
DMSO/TMAO-reductase; IMG reference gene:2512956549; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; TIGRFAM: molybdopterin guanine dinucleotide-containing S/N-oxide reductases; Tat (twin-arginine translocation) pathway signal sequence.
      
 0.749
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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