Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RSP_2018Hypothetical protein; IMG reference gene:2512953935. (103 aa)    
Predicted Functional Partners:
rpmB
LSU ribosomal protein L28P; IMG reference gene:2512953932; PFAM: Ribosomal L28 family; TIGRFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
      
 0.857
RSP_2017
Hypothetical protein; IMG reference gene:2512953934; PFAM: Protein of unknown function (DUF461).
   
  
 0.842
RSP_1098
IMG reference gene:2512956143; PFAM: Protein of unknown function (DUF3035).
  
     0.764
RSP_6127
Hypothetical protein; IMG reference gene:2512955764.
  
     0.761
RSP_1972
Hypothetical protein; IMG reference gene:2512953886.
  
     0.758
pccA
Biotin carboxyl carrier protein;biotin carboxylase; IMG reference gene:2512954118; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; Biotin-requiring enzyme; TIGRFAM: acetyl-CoA carboxylase, biotin carboxylase subunit; truncated by 29 aa.
      
 0.756
RSP_6009
Hypothetical protein; IMG reference gene:2512953497.
  
     0.754
RSP_1775
Hypothetical protein; IMG reference gene:2512953681.
  
     0.749
RSP_2983
Hypothetical protein; IMG reference gene:2512954949; extended by 29 aa.
  
    0.743
RSP_1011
Hypothetical protein; IMG reference gene:2512956048.
  
     0.738
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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