Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RSP_2019IMG reference gene:2512953936; PFAM: Protein of unknown function (DUF3478). (150 aa)    
Predicted Functional Partners:
RSP_7510
Hypothetical protein; IMG reference gene:2512953937; new gene.
       0.773
RSP_1500
Putative anti-sigma regulatory kinase; IMG reference gene:2512953392; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
   
    0.458
RSP_2018
Hypothetical protein; IMG reference gene:2512953935.
       0.441
RSP_2020
DHC, diheme cytochrome c; IMG reference gene:2512953938; PFAM: Dihaem cytochrome c.
       0.434
shp
Mono-heme class I cytochrome c; High-spin cytochrome. Transiently bind oxygen during autoxidation, which occurs with a half-life of 3 min with a 4-fold excess of O(2). Also binds carbon monoxide, azide and cyanide.
       0.421
RSP_2022
IMG reference gene:2512953940; PFAM: Cytochrome b(N-terminal)/b6/petB; Dihaem cytochrome c.
       0.421
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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