STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_2020DHC, diheme cytochrome c; IMG reference gene:2512953938; PFAM: Dihaem cytochrome c. (161 aa)    
Predicted Functional Partners:
shp
Mono-heme class I cytochrome c; High-spin cytochrome. Transiently bind oxygen during autoxidation, which occurs with a half-life of 3 min with a 4-fold excess of O(2). Also binds carbon monoxide, azide and cyanide.
 
    0.953
RSP_2022
IMG reference gene:2512953940; PFAM: Cytochrome b(N-terminal)/b6/petB; Dihaem cytochrome c.
 
   
0.811
RSP_0335
Diguanylate cyclase/phosphodiesterase; IMG reference gene:2512955345; PFAM: EAL domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain.
   
 
 0.695
RSP_1063
Diguanylate cyclase/phosphodiesterase; IMG reference gene:2512956104; PFAM: EAL domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain.
  
 
 0.664
RSP_3510
Propeptide domain-containing protein; IMG reference gene:2512957021; PFAM: Peptidase propeptide and YPEB domain.
 
     0.593
RSP_2807
Putative cytochrome b; IMG reference gene:2512954806; PFAM: Cytochrome b(N-terminal)/b6/petB.
    0.524
RSP_7511
Hypothetical protein; IMG reference gene:2512953941; new gene; replaced RSP_2023 on the opposite strand.
       0.476
dctQ
TRAP-T family C4-dicarboxylate transporter, DctQ (4TMs) subunit; IMG reference gene:2512955943; PFAM: Tripartite ATP-independent periplasmic transporters, DctQ component.
  
    0.469
RSP_3512
Periplasmic sensor signal transduction histidine kinase; IMG reference gene:2512957023; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
     0.451
RSP_2019
IMG reference gene:2512953936; PFAM: Protein of unknown function (DUF3478).
  
    0.434
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.