STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_2045Hypothetical protein; IMG reference gene:2512953961. (504 aa)    
Predicted Functional Partners:
ccdA
IMG reference gene:2512954057; PFAM: Cytochrome C biogenesis protein transmembrane region.
   
    0.772
RSP_2693
Superoxide dismutase, Fe-Mn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
  
  
 0.585
RSP_2046
Hypothetical protein; IMG reference gene:2512953962.
  
    0.581
RSP_2047
ThiF family protein; IMG reference gene:2512953963; PFAM: ThiF family.
  
    0.519
RSP_2048
Putative metal-dependent protease of the PAD1/JAB1 superfamily; IMG reference gene:2512953964; PFAM: Mov34/MPN/PAD-1 family.
  
    0.517
RSP_2890
Copper-translocating P-type ATPase; IMG reference gene:2512954852; PFAM: E1-E2 ATPase; Heavy-metal-associated domain; haloacid dehalogenase-like hydrolase; TIGRFAM: copper-(or silver)-translocating P-type ATPase; copper ion binding protein; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC.
  
  
 0.507
RSP_3678
IMG reference gene:2512957212; PFAM: Siderophore-interacting protein; Siderophore-interacting FAD-binding domain.
   
    0.497
fumC
Fumarase, class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
  
    0.470
RSP_0463
IMG reference gene:2512955474; PFAM: Cation efflux family; TIGRFAM: cation diffusion facilitator family transporter; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
  
  
 0.459
RSP_0411
Hypothetical protein; IMG reference gene:2512955423.
   
 
 0.409
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.