STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_2068Putative ClpP-like protease; IMG reference gene:2512953984; PFAM: Clp protease; Belongs to the peptidase S14 family. (279 aa)    
Predicted Functional Partners:
clpX
ATP-dependent protease ATP-binding subunit; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
  
 
 0.981
RSP_2069
Putative phage portal protein, HK97 family; IMG reference gene:2512953985; PFAM: Phage portal protein; TIGRFAM: phage portal protein, HK97 family.
    0.966
RSP_2070
Putative Phage-related terminase; IMG reference gene:2512953986; PFAM: Phage Terminase.
 
    0.947
RSP_2067
IMG reference gene:2512953983; PFAM: Phage capsid family; TIGRFAM: phage major capsid protein, HK97 family.
 
    0.941
RSP_2072
Putative Phage-related Holin protein; IMG reference gene:2512953988; PFAM: HNH endonuclease.
 
    0.902
hrcA
Heat-inducible transcription repressor HrcA; Negative regulator of class I heat shock genes (grpE-dnaK- dnaJ and groELS operons). Prevents heat-shock induction of these operons.
   
  
 0.876
RSP_3474
Type VI secretion ATPase, ClpV1 family; IMG reference gene:2512956984; PFAM: AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; Clp amino terminal domain; ATPase family associated with various cellular activities (AAA); TIGRFAM: type VI secretion ATPase, ClpV1 family; Belongs to the ClpA/ClpB family.
  
 
 0.859
clpB
Chaperone ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE; Belongs to the ClpA/ClpB family.
  
 
 0.858
clpA
Chaperonin clpA/B; IMG reference gene:2512954227; PFAM: ATPase family associated with various cellular activities (AAA); Clp amino terminal domain; AAA domain (Cdc48 subfamily); C-terminal, D2-small domain, of ClpB protein; TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA; Belongs to the ClpA/ClpB family.
  
 
 0.855
RSP_2360
Putative head portal protein, HK97 family; IMG reference gene:2512954301; PFAM: Phage portal protein; TIGRFAM: phage portal protein, HK97 family.
    0.836
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.