STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bcrCEfflux channel; IMG reference gene:2512954085; PFAM: PAP2 superfamily. (235 aa)    
Predicted Functional Partners:
uppP
Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
  
 
 0.923
uppS
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
 
 0.913
mraY
Phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
    
 0.911
RSP_0119
PA-phosphatase related phosphoesterase; IMG reference gene:2512955110; PFAM: PAP2 superfamily.
   
 
  0.900
mepA
Murein endopeptidase; IMG reference gene:2512956410; PFAM: Penicillin-insensitive murein endopeptidase.
   
  
 0.817
ompW
Outer membrane protein; IMG reference gene:2512954452; PFAM: OmpW family.
      
 0.741
nifZ
Putative NifZ; IMG reference gene:2512955556; PFAM: NifZ domain.
  
  
 0.641
asnB
Putative asparagine synthetase; IMG reference gene:2512954501; PFAM: Asparagine synthase; TIGRFAM: asparagine synthase (glutamine-hydrolyzing).
  
  
 0.640
fixR
Short-chain alcohol dehydrogenase; IMG reference gene:2512956108; PFAM: short chain dehydrogenase; truncated by 15 aa.
   
 
 0.626
nifQ
Putative nitrogen fixation protein nifQ; IMG reference gene:2512955545; PFAM: NifQ.
     
 0.615
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
Server load: low (30%) [ZH]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.