Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RSP_2163IMG reference gene:2512954086; TIGRFAM: lytic murein transglycosylase. (267 aa)    
Predicted Functional Partners:
purE
5-(carboxyamino)imidazole ribonucleotide mutase; Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR).
  
    0.650
RSP_3565
Glycoside hydrolase, family 25; IMG reference gene:2512957075; PFAM: Glycosyl hydrolases family 25.
  
    0.571
RSP_0650
Putative transglycosylase; IMG reference gene:2512955669; PFAM: Transglycosylase SLT domain.
  
  
 0.551
RSP_2967
IMG reference gene:2512954933; PFAM: Major Facilitator Superfamily; extended by 10 aa.
  
    0.522
RSP_1355
Glycosyl transferase, family 51; IMG reference gene:2512956402; PFAM: Penicillin-Binding Protein C-terminus Family; Penicillin binding protein transpeptidase domain; Transglycosylase; TIGRFAM: penicillin-binding protein 1C.
  
    0.424
cerI
Autoinducer synthesis protein; IMG reference gene:2512955115; PFAM: Autoinducer synthetase.
  
     0.409
bcrC
Efflux channel; IMG reference gene:2512954085; PFAM: PAP2 superfamily.
  
    0.409
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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