Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RSP_2167Putative membrane protein; IMG reference gene:2512954090; PFAM: Rhomboid family. (246 aa)    
Predicted Functional Partners:
RSP_2168
Hypothetical protein; IMG reference gene:2512954091; PFAM: Glutathione-dependent formaldehyde-activating enzyme.
 
    0.868
putA
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
    0.772
amiC
IMG reference gene:2512954945; PFAM: N-acetylmuramoyl-L-alanine amidase; Localisation of periplasmic protein complexes.
   
   0.648
RSP_1898
IMG reference gene:2512953807; PFAM: 5-formyltetrahydrofolate cyclo-ligase family; TIGRFAM: 5,10-methenyltetrahydrofolate synthetase.
  
  
 0.561
tatA
Twin-arginine translocation system protein, TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.541
tatA-2
Putative sec-independent protein translocase protein, TatE; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.541
putR1
IMG reference gene:2512954088; PFAM: AsnC family.
  
    0.499
RSP_3725
Dynamin family protein; IMG reference gene:2512957260; PFAM: Dynamin family.
    
 
 0.499
tatB
Twin-arginine translocation system protein, TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.
   
 
 0.478
RSP_0851
Putative transporter, AEC family; IMG reference gene:2512955881; PFAM: Membrane transport protein.
  
    0.473
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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