STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pccRTranscriptional Regulator, MerR family; Transcriptional regulator that controls propionyl-CoA assimilation through the methylmalonyl-CoA pathway via regulation of pccB expression; Belongs to the short-chain fatty acyl-CoA assimilation regulator (ScfR) family. (461 aa)    
Predicted Functional Partners:
pccB
propionyl-CoA carboxylase carboxyltransferase subunit; IMG reference gene:2512954113; PFAM: Carboxyl transferase domain; Belongs to the AccD/PCCB family.
     
 0.905
RSP_2187
Multidrug efflux pump, Major Facilitator Superfamily (MFS); IMG reference gene:2512954111; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, Bcr/CflA subfamily.
       0.661
RSP_3621
IMG reference gene:2512957153; PFAM: 'Cold-shock' DNA-binding domain; truncated by 9 aa.
   
    0.577
glcB
Malate synthase; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
 
   
 0.547
RSP_0169
Na+/solute symporter; IMG reference gene:2512955167; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
 
   
 0.544
RSP_2188
Hypothetical protein; IMG reference gene:2512954112; PFAM: Protein of unknown function, DUF486.
  
    0.522
RSP_0402
Transcriptional regulator, TetR family; IMG reference gene:2512955411; PFAM: Bacterial regulatory proteins, tetR family.
  
  
 0.448
RSP_0616
Transcriptional regulator, AraC family; IMG reference gene:2512955632; PFAM: AraC-like ligand binding domain.
 
  
 0.443
gltA
Citrate synthase; IMG reference gene:2512953910; PFAM: Citrate synthase; TIGRFAM: citrate synthase I (hexameric type); Belongs to the citrate synthase family.
  
  
 0.441
RSP_2965
Transcriptional regulator, LysR family; IMG reference gene:2512954928; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family.
  
  
 0.427
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.