Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RSP_2201IMG reference gene:2512954129; PFAM: MerR family regulatory protein; MerR, DNA binding. (126 aa)    
Predicted Functional Partners:
RSP_2203
Uncharacterized protein, possibly involved in aromatic compounds catabolism; IMG reference gene:2512954131; PFAM: Thioesterase superfamily.
  
    0.723
RSP_2202
Hypothetical protein; IMG reference gene:2512954130; PFAM: Thioesterase superfamily; TIGRFAM: uncharacterized domain 1.
  
    0.719
RSP_2204
Multidrug efflux pump, MATE family; IMG reference gene:2512954132; PFAM: MatE; TIGRFAM: putative efflux protein, MATE family.
     
 0.695
RSP_2200
IMG reference gene:2512954128; PFAM: MerR family regulatory protein; MerR, DNA binding.
 
    
0.684
rpoC
DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.622
rpoB
DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.607
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
   0.570
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.567
RSP_1372
IMG reference gene:2512956419; PFAM: Major Facilitator Superfamily.
   
  
 0.488
RSP_2199
IMG reference gene:2512954127; PFAM: Acyl-CoA dehydrogenase N terminal; Acyl-CoA dehydrogenase, C-terminal domain; Acyl-CoA dehydrogenase, middle domain; Acyl-CoA dehydrogenase, N-terminal domain.
       0.486
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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