STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_2218Hypothetical protein; IMG reference gene:2512954146; PFAM: L,D-transpeptidase catalytic domain. (180 aa)    
Predicted Functional Partners:
RSP_1201
Hypothetical protein; IMG reference gene:2512956245; PFAM: L,D-transpeptidase catalytic domain.
 
  
 0.755
mepA
Murein endopeptidase; IMG reference gene:2512956410; PFAM: Penicillin-insensitive murein endopeptidase.
  
    0.486
RSP_2217
Putative ring-cleavage extradiol dioxygenase; IMG reference gene:2512954145; PFAM: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.
  
    0.442
RSP_1200
Uncharacterized protein with SCP/PR1 domains; IMG reference gene:2512956244; PFAM: Cysteine-rich secretory protein family; truncated by 5 aa.
 
     0.414
RSP_2774
Hypothetical protein; IMG reference gene:2512954724; PFAM: Putative peptidoglycan binding domain; L,D-transpeptidase catalytic domain; truncated by 10 aa.
 
  
 0.410
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.