STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_2234Putative DNA-binding protein; IMG reference gene:2512954163; TIGRFAM: putative DNA modification/repair radical SAM protein. (406 aa)    
Predicted Functional Partners:
RSP_2232
Putative uracil-DNA glycosylase; IMG reference gene:2512954162; PFAM: Uracil DNA glycosylase superfamily; TIGRFAM: probable DNA metabolism protein; uracil-DNA glycosylase family domain; uracil-DNA glycosylase, family 4; extended by 11 aa.
    0.968
RSP_3496
Zinc carboxypeptidase A metalloprotease (M14); IMG reference gene:2512957006; truncated by 146 aa.
   
  
 0.779
RSP_3706
Hypothetical protein; IMG reference gene:2512957242.
   
  
 0.776
RSP_2879
Hypothetical protein; IMG reference gene:2512954841; PFAM: Carbon monoxide dehydrogenase subunit G (CoxG).
   
  
 0.713
RSP_2395
IMG reference gene:2512954339; PFAM: Cytochrome c; Di-haem cytochrome c peroxidase.
      
 0.709
RSP_2235
Penicillin-binding protein, beta-lactamase class C; IMG reference gene:2512954164; PFAM: Beta-lactamase.
       0.553
RSP_0224
ATP-dependent helicase; IMG reference gene:2512955226; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase.
     
 0.464
RSP_2236
Transcriptional regulator, MarR family; IMG reference gene:2512954165.
  
    0.400
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.