STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rluBPseudouridine synthase, (predicted); IMG reference gene:2512954197; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase; Belongs to the pseudouridine synthase RsuA family. (508 aa)    
Predicted Functional Partners:
RSP_2265
IMG reference gene:2512954195; PFAM: 5-bromo-4-chloroindolyl phosphate hydrolysis protein.
     
 0.945
cmk
Cytidylate kinase; IMG reference gene:2512957104; PFAM: Cytidylate kinase; Adenylate kinase; TIGRFAM: cytidylate kinase.
  
 0.934
telA
Tellurite resistance protein; IMG reference gene:2512954194; PFAM: Toxic anion resistance protein (TelA); Belongs to the TelA family.
     
 0.919
der
GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.876
RSP_2939
Condensin subunit ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
  
  
 0.862
RSP_2268
Metallo Beta lactamase superfamily; IMG reference gene:2512954199; Belongs to the UPF0173 family.
  
  
 0.841
RSP_0786
IMG reference gene:2512955813; PFAM: Endonuclease/Exonuclease/phosphatase family.
  
    0.828
xthA1
Exodeoxyribonuclease III; IMG reference gene:2512955877; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth).
  
    0.825
xthA
Exodeoxyribonuclease III; IMG reference gene:2512954602; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth).
  
    0.823
xthA1-2
Putative exodeoxyribonuclease III; IMG reference gene:2512956934; PFAM: Endonuclease/Exonuclease/phosphatase family; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III (xth).
  
    0.823
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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