STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_2416Hypothetical protein; IMG reference gene:2512954360; PFAM: Bacterial domain of unknown function (DUF403). (316 aa)    
Predicted Functional Partners:
RSP_2415
Hypothetical protein; IMG reference gene:2512954359; PFAM: Domain of unknown function (DUF404); Domain of unknown function (DUF407); extended by 7 aa.
  
 0.994
RSP_2417
Transglutaminase-like enzyme, predicted cysteine protease; IMG reference gene:2512954361; PFAM: Transglutaminase-like superfamily; Bacterial transglutaminase-like N-terminal region.
  
 0.983
RSP_2420
Putative proteasome-type protease; IMG reference gene:2512954362; PFAM: Proteasome subunit.
 
    0.958
RSP_0952
IMG reference gene:2512955988; PFAM: Transglutaminase-like superfamily; Bacterial transglutaminase-like N-terminal region.
  
 0.893
RSP_0953
Hypothetical protein; IMG reference gene:2512955989; PFAM: Bacterial domain of unknown function (DUF403); Domain of unknown function (DUF404); Domain of unknown function (DUF407).
 
  
0.830
RSP_3180
Transglutaminase-like enzyme; IMG reference gene:2512956689; PFAM: Transglutaminase-like superfamily.
 
  
 0.771
RSP_0954
Transglutaminase-like domain protein; IMG reference gene:2512955990; PFAM: Transglutaminase-like superfamily; Bacterial transglutaminase-like N-terminal region; Putative amidoligase enzyme (DUF2126).
 
  
 0.714
lig2
DNA ligase; IMG reference gene:2512954357; PFAM: ATP dependent DNA ligase domain; DNA ligase N terminus; ATP dependent DNA ligase C terminal region; TIGRFAM: DNA ligase, ATP-dependent, PP_1105 family.
  
    0.527
RSP_2414
Putative exonuclease, DNA ligase-associated; IMG reference gene:2512954358; PFAM: Metallo-beta-lactamase superfamily; TIGRFAM: putative exonuclease, DNA ligase-associated.
  
    0.513
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.