STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_2467Putative large terminase; IMG reference gene:2512954409; PFAM: Terminase-like family; extended by 18 aa. (432 aa)    
Predicted Functional Partners:
RSP_2468
Putative portal protein; IMG reference gene:2512954410; PFAM: Phage portal protein; TIGRFAM: phage portal protein, HK97 family.
    0.962
RSP_2470
Prohead peptidase; IMG reference gene:2512954412; PFAM: Caudovirus prohead protease; TIGRFAM: phage prohead protease, HK97 family.
 
    0.924
RSP_2474
IMG reference gene:2512954418; PFAM: Conserved hypothetical phage protein (DUF2376); Protein of unknown function (DUF3356); TIGRFAM: phage conserved hypothetical protein.
 
    0.922
RSP_2479
Putative phage host specificity protein; IMG reference gene:2512954423.
    0.901
RSP_2475
Putative phage tail minor protein; IMG reference gene:2512954419; TIGRFAM: phage tail tape measure protein, lambda family.
 
    0.894
RSP_2471
Putative phage phi-C31 gp36 major capsid-like protein; IMG reference gene:2512954413; PFAM: Phage capsid family; TIGRFAM: phage major capsid protein, HK97 family.
 
    0.891
RSP_2473
IMG reference gene:2512954417; PFAM: Phage major tail protein 2; TIGRFAM: phage major tail protein, TP901-1 family.
 
    0.878
RSP_2472
IMG reference gene:2512954414; TIGRFAM: phage conserved hypothetical protein, phiE125 gp8 family.
 
    0.867
RSP_2477
IMG reference gene:2512954421; PFAM: Phage conserved hypothetical protein BR0599; Uncharacterized conserved protein (DUF2163); TIGRFAM: phage conserved hypothetical protein BR0599.
 
    0.866
RSP_2478
IMG reference gene:2512954422; TIGRFAM: putative phage cell wall peptidase, NlpC/P60 family.
 
    0.859
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.