STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_2581Rhodanese; IMG reference gene:2512954524; PFAM: Rhodanese-like domain; TIGRFAM: PQQ-dependent catabolism-associated CXXCW motif protein. (175 aa)    
Predicted Functional Partners:
xoxJ
Amino acid ABC transporter substrate-binding protein, PAAT family; IMG reference gene:2512954523; PFAM: Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein.
  
 0.980
cycB
Cytochrome c553i; IMG reference gene:2512954522; TIGRFAM: c-type cytochrome, methanol metabolism-related.
 
  
 0.962
RSP_2582
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; IMG reference gene:2512954525; TIGRFAM: ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system; extended by 25 aa.
 
    0.927
RSP_2583
PQQ-dependent catabolism-associated beta-propeller protein; IMG reference gene:2512954526; PFAM: 3-carboxy-cis,cis-muconate lactonizing enzyme; TIGRFAM: PQQ-dependent catabolism-associated beta-propeller protein; 40-residue YVTN family beta-propeller repeat; extended by 8 aa.
 
  
 0.907
RSP_2588
Hypothetical protein; IMG reference gene:2512954531.
 
    0.885
xoxF
Putative pqq dehydrogenase protein; IMG reference gene:2512954521; PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus; Pyrrolo-quinoline quinone coenzyme C-terminus; PQQ enzyme repeat; TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family.
 
  
 0.882
RSP_2587
ABC multidrug efflux transporter, inner membrane subunit; IMG reference gene:2512954530; PFAM: ABC-2 type transporter; TIGRFAM: alcohol ABC transporter, permease protein.
 
    0.881
RSP_2584
Hypothetical protein; IMG reference gene:2512954527.
 
    0.849
groEL3
Putative chaperonin groEL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions. Belongs to the chaperonin (HSP60) family.
    
 
 0.838
RSP_2589
Zn-dependent hydrolase, glyoxylase; IMG reference gene:2512954532; PFAM: Metallo-beta-lactamase superfamily; truncated by 17 aa.
 
 
 0.837
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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