STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_2586ABC multidrug efflux transporter, ATPase subunit; IMG reference gene:2512954529; PFAM: ABC transporter; TIGRFAM: ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. (242 aa)    
Predicted Functional Partners:
RSP_2587
ABC multidrug efflux transporter, inner membrane subunit; IMG reference gene:2512954530; PFAM: ABC-2 type transporter; TIGRFAM: alcohol ABC transporter, permease protein.
 
  
 0.975
RSP_2582
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; IMG reference gene:2512954525; TIGRFAM: ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system; extended by 25 aa.
 
  
 0.950
RSP_2583
PQQ-dependent catabolism-associated beta-propeller protein; IMG reference gene:2512954526; PFAM: 3-carboxy-cis,cis-muconate lactonizing enzyme; TIGRFAM: PQQ-dependent catabolism-associated beta-propeller protein; 40-residue YVTN family beta-propeller repeat; extended by 8 aa.
 
  
 0.950
RSP_2584
Hypothetical protein; IMG reference gene:2512954527.
 
    0.925
RSP_2588
Hypothetical protein; IMG reference gene:2512954531.
 
    0.911
RSP_1287
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family; IMG reference gene:2512956332; PFAM: ABC transporter.
 
    
0.908
RSP_3373
ABC efflux transporter, inner membrane subunit; IMG reference gene:2512956884; PFAM: Predicted permease.
 
 
  
 0.876
xoxF
Putative pqq dehydrogenase protein; IMG reference gene:2512954521; PFAM: Pyrrolo-quinoline quinone coenzyme N-terminus; Pyrrolo-quinoline quinone coenzyme C-terminus; PQQ enzyme repeat; TIGRFAM: PQQ-dependent dehydrogenase, methanol/ethanol family.
 
    0.852
RSP_2585
Hypothetical protein; IMG reference gene:2512954528.
  
    0.847
xoxJ
Amino acid ABC transporter substrate-binding protein, PAAT family; IMG reference gene:2512954523; PFAM: Bacterial extracellular solute-binding proteins, family 3; TIGRFAM: quinoprotein dehydrogenase-associated probable ABC transporter substrate-binding protein.
 
  
 0.837
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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