STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_2616Small protein A (tmRNA-binding); IMG reference gene:2512954560; PFAM: SmpA / OmlA family. (165 aa)    
Predicted Functional Partners:
RSP_2698
Putative quinoprotein; IMG reference gene:2512954642; PFAM: PQQ enzyme repeat.
  
 
 0.923
comL
Beta-barrel assembly machine subunit BamD; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.917
bamA
Beta-barrel assembly machine subunit BamA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.916
RSP_0841
IMG reference gene:2512955870; PFAM: Domain of unknown function (DUF3576).
  
    0.736
RSP_2615
Putative metal-binding protein, possibly nucleic-acid binding protein; IMG reference gene:2512954559; PFAM: Uncharacterized ACR, COG1399.
 
    0.727
RSP_0164
Hypothetical protein; IMG reference gene:2512955161; PFAM: Uncharacterized protein conserved in bacteria (DUF2312).
  
  
 0.721
RSP_1659
Hypothetical protein; IMG reference gene:2512953562; PFAM: Uncharacterized protein conserved in bacteria (DUF2312).
  
   
 0.667
RSP_3610
Hypothetical protein; IMG reference gene:2512957125; PFAM: Uncharacterized protein conserved in bacteria (DUF2312).
  
   
 0.666
RSP_2078
Hypothetical protein; IMG reference gene:2512953998; PFAM: Uncharacterized protein conserved in bacteria (DUF2312).
  
   
 0.665
RSP_1812
Amino acid/amide ABC transporter substrate-binding protein, HAAT family; IMG reference gene:2512953719; PFAM: LppC putative lipoprotein.
  
    0.653
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.