STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_2808Hypothetical protein; IMG reference gene:2512954805. (84 aa)    
Predicted Functional Partners:
RSP_2807
Putative cytochrome b; IMG reference gene:2512954806; PFAM: Cytochrome b(N-terminal)/b6/petB.
 
    0.940
pufA
LHI alpha, Light-harvesting B875 protein; Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers.
   
    0.577
RSP_0475
Cytochrome b; IMG reference gene:2512955486; PFAM: Cytochrome b(N-terminal)/b6/petB.
 
    0.565
RSP_2022
IMG reference gene:2512953940; PFAM: Cytochrome b(N-terminal)/b6/petB; Dihaem cytochrome c.
 
    0.534
phoB
IMG reference gene:2512955588; PFAM: Response regulator receiver domain.
   
    0.457
shp
Mono-heme class I cytochrome c; High-spin cytochrome. Transiently bind oxygen during autoxidation, which occurs with a half-life of 3 min with a 4-fold excess of O(2). Also binds carbon monoxide, azide and cyanide.
   
    0.457
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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