Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RSP_2811Putative ABC transporter, periplasmic substrate-binding protein; IMG reference gene:2512954802; PFAM: mce related protein. (321 aa)    
Predicted Functional Partners:
RSP_2809
ABC transporter, inner membrane subunit; IMG reference gene:2512954804; PFAM: Permease; STAS domain; TIGRFAM: conserved hypothetical integral membrane protein; truncated by 10 aa.
 
 0.998
RSP_2810
ABC transporter, ATPase subunit; IMG reference gene:2512954803; PFAM: ABC transporter.
 
 0.998
RSP_2812
ABC-type uncharacterized transport system, auxiliary component; IMG reference gene:2512954801; PFAM: Protein of unknown function (DUF330).
 
   0.992
RSP_0890
Putative yrbC precursor; IMG reference gene:2512955922; PFAM: Toluene tolerance, Ttg2.
  
 0.978
RSP_2459
ABC transporter, inner membrane subunit; IMG reference gene:2512954402; PFAM: Domain of unknown function DUF140; TIGRFAM: conserved hypothetical integral membrane protein.
  
 0.972
RSP_2458
ABC transporter, ATPase subunit; IMG reference gene:2512954401; PFAM: ABC transporter.
  
 0.968
RSP_0194
Putative ABC transporter, substrate-binding protein; IMG reference gene:2512955191; PFAM: mce related protein.
     
  0.900
RSP_1501
Antisigma-factor antagonist (STAS) domain protein; IMG reference gene:2512953393; PFAM: STAS domain; TIGRFAM: anti-anti-sigma factor; Belongs to the anti-sigma-factor antagonist family.
  
 
 0.805
motB
Flagellar MotB protein; IMG reference gene:2512955236; PFAM: OmpA family.
   
   0.601
RSP_2289
Flagellar motor protein; IMG reference gene:2512954224; PFAM: OmpA family.
   
   0.601
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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