STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mttBIMG reference gene:2512954800; PFAM: Trimethylamine methyltransferase (MTTB); Belongs to the trimethylamine methyltransferase family. (513 aa)    
Predicted Functional Partners:
dorA
DMSO/TMAO-reductase; IMG reference gene:2512956549; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide binding domain; TIGRFAM: molybdopterin guanine dinucleotide-containing S/N-oxide reductases; Tat (twin-arginine translocation) pathway signal sequence.
   
 
 0.904
dorB
DMSO-membrane protein; IMG reference gene:2512956548; PFAM: Nitrate reductase delta subunit.
   
 
  0.901
dorC
DMSO/TMAO pentaheme cytochrome c subunit; IMG reference gene:2512956547; PFAM: NapC/NirT cytochrome c family, N-terminal region; TIGRFAM: trimethylamine-N-oxide reductase c-type cytochrome TorC; Belongs to the TorC/TorY family.
   
 
  0.900
RSP_2769
Putative 5,10-methylenetetrahydrofolate reductase; IMG reference gene:2512954719; truncated by 14 aa.
 
    0.816
mtbC
Putative dimethylamine corrinoid protein; IMG reference gene:2512954046; PFAM: B12 binding domain; TIGRFAM: methylmalonyl-CoA mutase C-terminal domain.
  
 0.815
RSP_2770
Hypothetical protein; IMG reference gene:2512954720.
 
    0.810
RSP_2121
IMG reference gene:2512954044; PFAM: Protein of unknown function (DUF1638).
 
    0.809
RSP_2766
Putative metal-binding protein; IMG reference gene:2512954717.
 
     0.809
RSP_2768
Pterin binding enzyme; IMG reference gene:2512954718; PFAM: Pterin binding enzyme.
 
     0.796
RSP_2124
Methionine synthase I; IMG reference gene:2512954048; PFAM: Homocysteine S-methyltransferase.
  
     0.734
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.