STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_2897Clan AA aspartic protease, TIGR02281 family; IMG reference gene:2512954859; PFAM: Retroviral aspartyl protease; TIGRFAM: clan AA aspartic protease, TIGR02281 family. (191 aa)    
Predicted Functional Partners:
RSP_2896
Multiple antibiotic transporter; IMG reference gene:2512954858; PFAM: MarC family integral membrane protein; TIGRFAM: membrane protein, MarC family.
       0.682
RSP_2895
Putative ABC transporter, fused ATPase subunits; IMG reference gene:2512954857; PFAM: ABC transporter.
       0.564
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
       0.536
RSP_3550
ATP phosphoribosyltransferase regulatory subunit; IMG reference gene:2512957060.
  
     0.474
RSP_2476
TIGR02217 family protein; IMG reference gene:2512954420; PFAM: Conserved hypothetical protein 2217 (DUF2460); TIGRFAM: TIGR02217 family protein.
  
     0.418
RSP_2468
Putative portal protein; IMG reference gene:2512954410; PFAM: Phage portal protein; TIGRFAM: phage portal protein, HK97 family.
  
    0.417
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.