STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3024Transcriptional regulator, IclR family/MhpR; IMG reference gene:2512956523; PFAM: IclR helix-turn-helix domain. (278 aa)    
Predicted Functional Partners:
RSP_3450
TIGR00370 family protein; IMG reference gene:2512956961; PFAM: Allophanate hydrolase subunit 1; TIGRFAM: TIGR00370 family protein.
  
    0.861
RSP_3449
IMG reference gene:2512956960; PFAM: Allophanate hydrolase subunit 2; TIGRFAM: biotin-dependent carboxylase uncharacterized domain.
  
    0.842
RSP_0616
Transcriptional regulator, AraC family; IMG reference gene:2512955632; PFAM: AraC-like ligand binding domain.
 
  
 0.493
pxpA
Putative lactam utilization protein B-like protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
    0.483
RSP_1442
Carbohydrate ABC transporter substrate-binding protein, CUT1 family; IMG reference gene:2512953333; PFAM: Bacterial extracellular solute-binding protein.
  
    0.466
RSP_0991
Putative transcriptional regulator, ROK family; IMG reference gene:2512956029; PFAM: ROK family.
  
  
 0.420
RSP_3456
Putative dihydrodipicolinate synthase; IMG reference gene:2512956967; PFAM: Dihydrodipicolinate synthetase family; Belongs to the DapA family.
 
  
 0.412
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.