STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3025Putative NAD(P)H oxidoreductase; IMG reference gene:2512956522; PFAM: Flavodoxin-like fold. (199 aa)    
Predicted Functional Partners:
RSP_2429
Kef-type potassium/proton antiporter, CPA2 family; IMG reference gene:2512954372; PFAM: TrkA-N domain; Sodium/hydrogen exchanger family; TIGRFAM: transporter, monovalent cation:proton antiporter-2 (CPA2) family; truncated by 20 aa; TC 2.A.37.1.
 
 
 0.983
wrbA
Trp repressor binding protein WrbA, putative; IMG reference gene:2512954270; PFAM: NADPH-dependent FMN reductase; TIGRFAM: NAD(P)H:quinone oxidoreductase, type IV.
  
 
 0.931
ubiE
Demethylmenaquinone methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
     
  0.900
lysA
Orn/DAP/Arg decarboxylase, family 2; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
  0.663
nspC
Carboxynorspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.
    
  0.663
RSP_1991
Putative Ornithine decarboxylase; IMG reference gene:2512953907; PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
    
  0.663
RSP_3023
Hypothetical protein; IMG reference gene:2512956521.
  
    0.554
RSP_3437
Aspartate aminotransferase; IMG reference gene:2512956948; PFAM: Aminotransferase class I and II.
   
    0.498
RSP_3439
Aspartate aminotransferase; IMG reference gene:2512956950; PFAM: Aminotransferase class I and II.
   
    0.498
aatA
Aspartate aminotransferase; IMG reference gene:2512955793; PFAM: Aminotransferase class I and II.
   
    0.495
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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