STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3035Putative transporter, major facilitator superfamily (MFS); IMG reference gene:2512956534; PFAM: Bacterial protein of unknown function (DUF894). (425 aa)    
Predicted Functional Partners:
RSP_3414
ABC Fe+3-siderophore transporter, inner membrane subunit; IMG reference gene:2512956924; PFAM: FecCD transport family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
  
  
 0.763
RSP_3036
Putative hydrolase, CocE/NonD family; IMG reference gene:2512956535; PFAM: X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain; X-Pro dipeptidyl-peptidase (S15 family); TIGRFAM: putative hydrolase, CocE/NonD family.
  
    0.648
RSP_1327
Putative flagellar basal body rod protein; IMG reference gene:2512956373; PFAM: Domain of unknown function (DUF1078); Flagella basal body rod protein; TIGRFAM: flagellar basal-body rod protein FlgF; fagellar hook-basal body proteins.
   
   0.578
RSP_3034
ABC peptide/opine transporter, periplasmic substrate-binding protein; IMG reference gene:2512956533; PFAM: Bacterial extracellular solute-binding proteins, family 5 Middle.
  
    0.507
RSP_3033
ABC peptide/opine transporter, ATPase subunit; IMG reference gene:2512956532; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Belongs to the ABC transporter superfamily.
  
    0.462
RSP_3031
ABC peptide/opine transporter, inner membrane subunit; IMG reference gene:2512956530; PFAM: Binding-protein-dependent transport system inner membrane component.
  
    0.458
RSP_3032
ABC peptide/opine transporter, ATPase subunit; IMG reference gene:2512956531; PFAM: ABC transporter; Oligopeptide/dipeptide transporter, C-terminal region; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain; Belongs to the ABC transporter superfamily.
  
    0.445
RSP_3030
ABC peptide/opine transporter, inner membrane subunit; IMG reference gene:2512956529; PFAM: Binding-protein-dependent transport system inner membrane component; extended by 8 aa.
  
    0.442
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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