STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3037Putative short-chain dehydrogenase/reductase; IMG reference gene:2512956536; PFAM: short chain dehydrogenase. (252 aa)    
Predicted Functional Partners:
RSP_3499
Short chain dehydrogenase; IMG reference gene:2512957011; PFAM: Class II Aldolase and Adducin N-terminal domain.
 
 
    0.891
nuoCD
NADH dehydrogenase subunit C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; In the N-terminal section; belongs to the complex I 30 kDa subunit family.
   
 
 0.815
RSP_3040
ABC permidine/putrescine transporter, periplasmic substrate-binding protein; IMG reference gene:2512956539; PFAM: Bacterial extracellular solute-binding protein.
 
    0.763
RSP_3039
ABC permidine/putrescine transporter, inner membrane subunit; IMG reference gene:2512956538; PFAM: Binding-protein-dependent transport system inner membrane component.
  
    0.747
RSP_3038
ABC permidine/putrescine transporter, inner membrane subunit; IMG reference gene:2512956537; PFAM: Binding-protein-dependent transport system inner membrane component.
  
    0.728
RSP_1075
IMG reference gene:2512956116; PFAM: short chain dehydrogenase; truncated by 9 aa.
  
     0.668
dorX
DMSO reductase regulatory protein DorX; IMG reference gene:2512956541; PFAM: Bacterial regulatory proteins, luxR family.
 
    0.663
RSP_0028
IMG reference gene:2512955011; PFAM: short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.553
potA-3
ABC permidine/putrescine transporter, ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
  
    0.548
RSP_0594
Putative choline sulfatase; IMG reference gene:2512955609; PFAM: Choline sulfatase enzyme C terminal; Sulfatase; TIGRFAM: choline-sulfatase.
   
 
 0.547
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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