STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSP_3143NIPSNAP family protein; IMG reference gene:2512956652; PFAM: NIPSNAP. (113 aa)    
Predicted Functional Partners:
RSP_3148
IMG reference gene:2512956657; PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit; TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit.
 
     0.837
ttdA
Fumarase alpha subunit; IMG reference gene:2512956655; PFAM: Fumarate hydratase (Fumerase); TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region.
 
     0.831
ttdB
Putative Tartrate dehydratase beta subunit; IMG reference gene:2512956654; PFAM: Fumarase C-terminus; TIGRFAM: hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region.
 
     0.829
sdhA-2
Putative succinate dehydrogenase/fumarate reductase, flavoprotein subunit; IMG reference gene:2512956656; PFAM: Fumarate reductase flavoprotein C-term; FAD binding domain.
 
     0.806
frdB
IMG reference gene:2512956659; TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein.
 
     0.804
RSP_3149
IMG reference gene:2512956658; PFAM: Succinate dehydrogenase/Fumarate reductase transmembrane subunit.
  
    0.778
RSP_3144
Putative membrane protein; IMG reference gene:2512956653; PFAM: Conserved hypothetical protein 698; TIGRFAM: conserved hypothetical integral membrane protein.
  
    0.775
RSP_3152
ABC nitrate/sulfonate/bicarbonate transporter family, periplasmic substrate-binding protein; IMG reference gene:2512956661; PFAM: NMT1/THI5 like.
 
     0.529
RSP_3151
ABC nitrate/sulfonate/bicarbonate transporter family, periplasmic substrate-binding protein; IMG reference gene:2512956660; PFAM: NMT1/THI5 like.
 
     0.513
Your Current Organism:
Rhodobacter sphaeroides 241
NCBI taxonomy Id: 272943
Other names: R. sphaeroides 2.4.1, Rhodobacter sphaeroides 2.4.1, Rhodobacter sphaeroides ATCC 17023, Rhodobacter sphaeroides ATH 2.4.1, Rhodobacter sphaeroides str. 2.4.1, Rhodobacter sphaeroides strain 2.4.1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.